The HTML file will always load by default instead of the PHP file. You likely uploaded the page the at some point before adding Alloy, which has to switch the page to using PHP.
My suggestion – delete the index.html file from your server, then go back to RW and do a Republish All Files from within RW.
Now the Blue update, all button keeps coming back after clicking update all and waiting for a few seconds. Then it turns back to update all but alloy is not updated.
Additionally @thor0128 it looks like you have Alloy in a Conditional but ONLY in the Full Entry view. This is why you’re seeing nothing in the Summary View:
It should not take 15 minutes for an update. I just did it from my laptop running RapidWeaver Classic, Stacks 5 and macOS Ventura and it took about 20 seconds to update from Alloy 3.2.0 to 3.3.1.
The things you’re describing @TitanWDD are all related to the Stacks plugin itself it sounds like and not Alloy, as Alloy has not control or say over the updater itself.
As stupid as it sounds, you might try quitting and restarting RapidWeaver. If you’ve already done that, give your Mac a restart.
If you continue to have problems with the Stacks updater you can retrieve v.3.3.1 via the Order Lookup system found on the Foundry Documentation pages and Elixir Support pages using the email address you used for your purchase.
Sorry to hear you’re having trouble updating Alloy @Rien. I’ve tried it again this morning and it updates quite fast here still. If you’re still having trouble after the help from @Steve_J and @jacksona above you can use the order lookup system I mentioned above to grab the latest copy using your email address to lookup the order and get the download link.